PH01003657G0070's details annotation
1.Annotation
ICBR annotation: peroxiredoxin, putative, expressed
Blast result AT3G06050 : 8.50E-77
Blast annotation: peroxiredoxin IIF
2.Location
Scaffold: PH01003657
Strand: -
| Region | Start | End |
| gene | 35390 | 39527 |
| mRNA | 35390 | 39527 |
| exon | 35390 | 35562 |
| exon | 36810 | 36904 |
| exon | 37975 | 38133 |
| exon | 38698 | 38727 |
| exon | 38828 | 39527 |
| CDS | 35457 | 35562 |
| CDS | 36810 | 36904 |
| CDS | 37975 | 38133 |
| CDS | 38698 | 38727 |
| CDS | 38828 | 39019 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000983 | Oxidative_phosphorylation |
| coexpression network | CFinderM001265 | proteolysis involved in cellular protein catabolic process, proteasome core complex, C3H Transcription_Regulator(from PlantTFDB) Proteasome Oxidative_phosphorylation endopeptidase activity, threonine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08534.9 | Redoxin | 47 | 188 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.