PH01003660G0040's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT1G07590 : 4.00E-138
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01003660
Strand: +
| Region | Start | End |
| gene | 37660 | 44205 |
| mRNA | 37660 | 44205 |
| exon | 37660 | 39829 |
| exon | 40069 | 40180 |
| exon | 40720 | 40755 |
| exon | 40930 | 41021 |
| exon | 41600 | 41887 |
| exon | 42263 | 43429 |
| exon | 43551 | 43673 |
| exon | 43986 | 44205 |
| CDS | 38309 | 39829 |
| CDS | 40069 | 40180 |
| CDS | 40720 | 40755 |
| CDS | 40930 | 41021 |
| CDS | 41600 | 41887 |
| CDS | 42263 | 43429 |
| CDS | 43551 | 43673 |
| CDS | 43986 | 44159 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 155 | 186 |
| PF01535.19 | PPR | 189 | 214 |
| PF12854.6 | PPR_1 | 219 | 245 |
| PF13041.5 | PPR_2 | 247 | 297 |
| PF13041.5 | PPR_2 | 351 | 397 |
| PF01535.19 | PPR | 425 | 449 |
| PF13041.5 | PPR_2 | 799 | 842 |
| PF13041.5 | PPR_2 | 943 | 985 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.