Annotation of co-expression genes

PH01003666G0150's details annotation

1.Annotation

ICBR annotation: ABC transporter, ATP-binding protein, putative, expressed

Blast result AT3G21250 : 0
Blast annotation: multidrug resistance-associated protein 6

2.Location

Scaffold: PH01003666
Strand: +

RegionStartEnd
gene99118104108
mRNA99118104108
exon9911899488
exon9957599661
exon99746100363
exon100489100653
exon100773101067
exon101158101372
exon101450101755
exon102746102997
exon103267103330
exon103441103668
exon103853104108
CDS9936699488
CDS9957599661
CDS99746100363
CDS100489100653
CDS100773101067
CDS101158101372
CDS101450101755
CDS102746102997
CDS103267103330
CDS103441103668
CDS103853103962

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00664.22ABC_membrane192443
PF00005.26ABC_tran512604
PF00005.26ABC_tran614740

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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