PH01003687G0160's details annotation
1.Annotation
ICBR annotation: nucleolar complex protein 2, putative, expressed
Blast result AT1G16500 : 2.20E-12
Blast annotation: -
2.Location
Scaffold: PH01003687
Strand: +
| Region | Start | End |
| gene | 88744 | 91368 |
| mRNA | 88744 | 91368 |
| exon | 88744 | 89079 |
| exon | 89580 | 91368 |
| CDS | 88891 | 89079 |
| CDS | 89580 | 90116 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000796 | RLK-Pelle_LRK10L-2 (from iTAK) RLK-Pelle_CrRLK1L-1 (from iTAK) glutathione biosynthetic process, Glutathione_metabolism RLK-Pelle_WAK (from iTAK) protein phosphorylation, chitin catabolic process, cell wall macromolecule catabolic process, glutathione synthase activity, ligase activity, ATP binding, chitinase activity, protein serine/threonine kinase activity, transferase activity, transferring phosphorus-containing groups, protein kinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.