PH01003694G0170's details annotation
1.Annotation
ICBR annotation: GPI-anchored wall transfer protein 1, putative, expressed
Blast result AT4G17910 : 7.20E-98
Blast annotation: transferases, transferring acyl groups
2.Location
Scaffold: PH01003694
Strand: +
| Region | Start | End |
| gene | 118289 | 127714 |
| mRNA | 118289 | 127714 |
| exon | 118289 | 118785 |
| exon | 118876 | 118939 |
| exon | 119024 | 119057 |
| exon | 119452 | 119582 |
| exon | 119790 | 119863 |
| exon | 120001 | 120079 |
| exon | 120179 | 120268 |
| exon | 120826 | 120899 |
| exon | 123417 | 123504 |
| exon | 123845 | 123971 |
| exon | 124068 | 124172 |
| exon | 124501 | 124624 |
| exon | 124978 | 124984 |
| exon | 125534 | 125578 |
| exon | 126223 | 126321 |
| exon | 127045 | 127714 |
| CDS | 118733 | 118785 |
| CDS | 118876 | 118939 |
| CDS | 119024 | 119057 |
| CDS | 119452 | 119582 |
| CDS | 119790 | 119863 |
| CDS | 120001 | 120079 |
| CDS | 120179 | 120268 |
| CDS | 120826 | 120899 |
| CDS | 123417 | 123504 |
| CDS | 123845 | 123971 |
| CDS | 124068 | 124172 |
| CDS | 124501 | 124624 |
| CDS | 124978 | 124984 |
| CDS | 125534 | 125578 |
| CDS | 126223 | 126321 |
| CDS | 127045 | 127101 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06423.11 | GWT1 | 297 | 398 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | phosphatidylinositol glycan, class W [EC:2.3.-.-] | ko00563 | K05283 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005789 | endoplasmic reticulum membrane |
| GO:0006506 | GPI anchor biosynthetic process |
| GO:0016021 | integral to membrane |
| GO:0016746 | transferase activity, transferring acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.