Annotation of co-expression genes

PH01003702G0030's details annotation

1.Annotation

ICBR annotation: aldehyde oxidase, putative, expressed

Blast result AT2G27150 : 0.00E+00
Blast annotation: abscisic aldehyde oxidase 3

2.Location

Scaffold: PH01003702
Strand: +

RegionStartEnd
gene1114619793
mRNA1114619793
exon1114612562
exon1347615134
exon1534315602
exon1574915958
exon1655216770
exon1733618301
exon1842318518
exon1862518723
exon1921419403
exon1949419793
CDS1248412562
CDS1347615134
CDS1534315602
CDS1574915958
CDS1655216770
CDS1733618301
CDS1842318518
CDS1862518723
CDS1921419403
CDS1949419726

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01799.19Fer2_268154
PF00941.20FAD_binding_5221400
PF03450.16CO_deh_flav_C414519
PF01315.21Ald_Xan_dh_C579688
PF02738.17Ald_Xan_dh_C27141238

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Carotenoid biosynthesisabscisic-aldehyde oxidase [EC:1.2.3.14]ko00906K09842

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016491oxidoreductase activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0046872metal ion binding
GO:0050660flavin adenine dinucleotide binding
GO:0051536iron-sulfur cluster binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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