PH01003703G0180's details annotation
1.Annotation
ICBR annotation: bromodomain domain containing protein, expressed
Blast result AT1G58025 : 1.20E-52
Blast annotation: DNA-binding bromodomain-containing protein
2.Location
Scaffold: PH01003703
Strand: +
| Region | Start | End |
| gene | 109765 | 113748 |
| mRNA | 109765 | 113748 |
| exon | 109765 | 111154 |
| exon | 111278 | 111355 |
| exon | 111436 | 111673 |
| exon | 112166 | 112244 |
| exon | 113016 | 113154 |
| exon | 113373 | 113748 |
| CDS | 110459 | 111154 |
| CDS | 111278 | 111355 |
| CDS | 111436 | 111673 |
| CDS | 112166 | 112244 |
| CDS | 113016 | 113154 |
| CDS | 113373 | 113408 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000343 | |
| coexpression network | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) actin cytoskeleton organization, transcription initiation, DNA-dependent, mitochondrial respiratory chain, sister_chromatid_cohesion chromosome condensation, CMGC_MAPK (from iTAK) actin binding, chromosome organization, ribulose-phosphate 3-epimerase activity, |
| coexpression network | CFinderM001147 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Alfin-like Transcription_Regulator(from iTAK) nucleotidyltransferase activity, TORC1_complex mediator complex, phospholipid metabolic process, TOR_signaling phospholipase A2 activity, lipid catabolic process, methylation, Linoleic_acid_metabolism Arachidonic_acid_metabolism Ether_lipid_metabolism alpha-Linolenic_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00439.24 | Bromodomain | 232 | 314 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.