PH01003715G0090's details annotation
1.Annotation
ICBR annotation: CUE domain containing protein, expressed
Blast result AT5G32440 : 1.50E-48
Blast annotation: Ubiquitin system component Cue protein
2.Location
Scaffold: PH01003715
Strand: -
| Region | Start | End |
| gene | 50772 | 54815 |
| mRNA | 50772 | 54815 |
| exon | 50772 | 51511 |
| exon | 51610 | 51836 |
| exon | 53120 | 53276 |
| exon | 54410 | 54815 |
| CDS | 51161 | 51511 |
| CDS | 51610 | 51836 |
| CDS | 53120 | 53276 |
| CDS | 54410 | 54613 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001706 | GH35 Glycoside_Hydrolases ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02845.15 | CUE | 52 | 88 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.