Annotation of co-expression genes

PH01003719G0190's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01003719
Strand: +

RegionStartEnd
gene126417134592
mRNA126417134592
exon126417127466
exon128754128793
exon129382129428
exon130189130566
exon130804130941
exon131280131405
exon132433132495
exon132623132715
exon133933134043
exon134251134592
CDS127215127466
CDS128754128793
CDS129382129428
CDS130189130566
CDS130804130941
CDS131280131405
CDS132433132495
CDS132623132715
CDS133933134043
CDS134251134427

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001178WASH_complex
eukaryotic translation elongation factor 1 complex,
phagocytosis,
cytoskeleton,
nucleoside-triphosphatase activity,
translational elongation,
translation elongation factor activity,
nucleotide binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10266.8Strumpellin96285
PF10266.8Strumpellin286471

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0071203WASH complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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