Annotation of co-expression genes

PH01003729G0080's details annotation

1.Annotation

ICBR annotation: MLO domain containing protein, putative, expressed

Blast result AT4G02600 : 1.00E-121
Blast annotation: Seven transmembrane MLO family protein

2.Location

Scaffold: PH01003729
Strand: +

RegionStartEnd
gene5475062652
mRNA5475062652
exon5475056075
exon5725457311
exon5762257776
exon5797258088
exon5816658220
exon5861658684
exon5943459555
exon5992960003
exon6010360191
exon6026260311
exon6062060660
exon6083261044
exon6112161188
exon6143661496
exon6160362652
CDS5596556075
CDS5725457311
CDS5762257776
CDS5797258088
CDS5816658220
CDS5861658684
CDS5943459555
CDS5992960003
CDS6010360191
CDS6026260311
CDS6062060660
CDS6083261044
CDS6112161188
CDS6143661496
CDS6160361851

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000489SAGA-type_complex
cell death,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03094.14Mlo4465

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008219cell death
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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