PH01003738G0130's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01003738
Strand: +
| Region | Start | End |
| gene | 100573 | 106572 |
| mRNA | 100573 | 106572 |
| exon | 100573 | 101550 |
| exon | 103046 | 103089 |
| exon | 103191 | 103259 |
| exon | 103440 | 103519 |
| exon | 104311 | 104393 |
| exon | 105683 | 106572 |
| CDS | 101478 | 101550 |
| CDS | 103046 | 103089 |
| CDS | 103191 | 103259 |
| CDS | 103440 | 103519 |
| CDS | 104311 | 104393 |
| CDS | 105683 | 105693 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001467 | HMG Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HMG |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00505.18 | HMG_box | 31 | 57 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.