Annotation of co-expression genes

PH01003751G0200's details annotation

1.Annotation

ICBR annotation: transcription factor, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01003751
Strand: -

RegionStartEnd
gene122615126369
mRNA122615126369
exon122615122792
exon122921123187
exon125562125639
exon125957126106
exon126220126369
CDS122622122792
CDS122921123187
CDS125562125639
CDS125957126106
CDS126220126327

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000025regulation of transcription, DNA-dependent,
TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
sequence-specific DNA binding,
sequence-specific DNA binding transcription factor activity,
bZIP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)bZIP
Transcription_Regulator(from PlantTFDB)bZIP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00170.20bZIP_166108

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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