PH01003757G0090's details annotation
1.Annotation
ICBR annotation: PFT1, putative, expressed
Blast result AT1G25540 : 9.50E-11
Blast annotation: phytochrome and flowering time regulatory protein (PFT1)
2.Location
Scaffold: PH01003757
Strand: +
| Region | Start | End |
| gene | 63947 | 70436 |
| mRNA | 63947 | 70436 |
| exon | 63947 | 64757 |
| exon | 64834 | 64887 |
| exon | 65498 | 65525 |
| exon | 66423 | 66456 |
| exon | 66618 | 66702 |
| exon | 67053 | 70436 |
| CDS | 64755 | 64757 |
| CDS | 64834 | 64887 |
| CDS | 65498 | 65525 |
| CDS | 66423 | 66456 |
| CDS | 66618 | 66702 |
| CDS | 67053 | 67397 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000387 | double-strand break repair, DNA metabolic process, endoplasmic reticulum, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.