Annotation of co-expression genes

PH01003758G0080's details annotation

1.Annotation

ICBR annotation: phospholipase D p1, putative, expressed

Blast result AT3G16785 : 2.00E-151
Blast annotation: phospholipase D P1

2.Location

Scaffold: PH01003758
Strand: +

RegionStartEnd
gene3641744252
mRNA3641744252
exon3641737461
exon3829638414
exon3856038701
exon3898939467
exon4050840657
exon4089140924
exon4100441537
exon4268942799
exon4308743233
exon4330843505
exon4371443815
exon4413244252
CDS3728837461
CDS3829638414
CDS3856038701
CDS3898939467
CDS4050840657
CDS4089140924
CDS4100441537
CDS4268942799
CDS4308743233
CDS4330843505
CDS4371443815
CDS4413244215

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001177MED6 Transcription_Regulator(from iTAK)
mediator complex,
regulation of transcription from RNA polymerase II promoter,
metabolic process,
Ether_lipid_metabolism
Glycerophospholipid_metabolism
Endocytosis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00614.21PLDc306330
PF00614.21PLDc695722

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerophospholipid metabolismphospholipase D1/2 [EC:3.1.4.4]ko00564K01115
Ether lipid metabolismphospholipase D1/2 [EC:3.1.4.4]ko00565K01115
Endocytosisphospholipase D1/2 [EC:3.1.4.4]ko04144K01115

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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