Annotation of co-expression genes

PH01003759G0160's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative, expressed

Blast result AT1G09770 : 2.00E-179
Blast annotation: cell division cycle 5

2.Location

Scaffold: PH01003759
Strand: -

RegionStartEnd
gene121462130738
mRNA121462130738
exon121462122280
exon129592130738
CDS122087122280
CDS129592130738

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000803DNA repair,
nucleus,
regulation_of_DNA-templated_transcription,_elongation
histone modification,
cell cycle,
RLK-Pelle_LRR-V (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
base-excision repair,
transcription initiation, DNA-dependent,
regulation of transcription from RNA polymerase II promoter,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13921.5Myb_DNA-bind_6357
PF13359.5DDE_Tnp_4380445

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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