PH01003790G0150's details annotation
1.Annotation
ICBR annotation: BEE 1, putative, expressed
Blast result AT5G62610 : 3.00E-44
Blast annotation: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
2.Location
Scaffold: PH01003790
Strand: -
| Region | Start | End |
| gene | 116257 | 119613 |
| mRNA | 116257 | 119613 |
| exon | 116257 | 116290 |
| exon | 116796 | 116867 |
| exon | 116964 | 117032 |
| exon | 117198 | 117263 |
| exon | 117445 | 117648 |
| exon | 118355 | 118371 |
| exon | 118431 | 118629 |
| exon | 119110 | 119613 |
| CDS | 116276 | 116290 |
| CDS | 116796 | 116867 |
| CDS | 116964 | 117032 |
| CDS | 117198 | 117263 |
| CDS | 117445 | 117648 |
| CDS | 118355 | 118371 |
| CDS | 118431 | 118629 |
| CDS | 119110 | 119469 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00010.25 | HLH | 135 | 182 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.