PH01003793G0110's details annotation
1.Annotation
ICBR annotation: vacuolar ATP synthase 98 kDa subunit, putative, expressed
Blast result AT2G28520 : 0.00E+00
Blast annotation: vacuolar proton ATPase A1
2.Location
Scaffold: PH01003793
Strand: +
| Region | Start | End |
| gene | 37673 | 47571 |
| mRNA | 37673 | 47571 |
| exon | 37673 | 37841 |
| exon | 37980 | 38087 |
| exon | 38459 | 38572 |
| exon | 38649 | 38822 |
| exon | 39050 | 39187 |
| exon | 39762 | 39869 |
| exon | 39996 | 40103 |
| exon | 40218 | 40348 |
| exon | 41127 | 41280 |
| exon | 42412 | 42572 |
| exon | 43336 | 43542 |
| exon | 44345 | 44497 |
| exon | 45620 | 45755 |
| exon | 46293 | 46486 |
| exon | 46572 | 46631 |
| exon | 47104 | 47571 |
| CDS | 37737 | 37841 |
| CDS | 37980 | 38087 |
| CDS | 38459 | 38572 |
| CDS | 38649 | 38822 |
| CDS | 39050 | 39187 |
| CDS | 39762 | 39869 |
| CDS | 39996 | 40103 |
| CDS | 40218 | 40348 |
| CDS | 41127 | 41280 |
| CDS | 42412 | 42572 |
| CDS | 43336 | 43542 |
| CDS | 44345 | 44497 |
| CDS | 45620 | 45755 |
| CDS | 46293 | 46486 |
| CDS | 46572 | 46631 |
| CDS | 47104 | 47308 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000131 | GT13 GlycosylTransferases vacuolar_proton-transporting_V-type_ATPase,_V0_domain Golgi membrane, proton-transporting V-type ATPase, V0 domain, |
| coexpression network | CFinderM001115 | vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) Oxidative_phosphorylation Phagosome |
| coexpression network | CFinderM001794 | NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation hydrogen ion transmembrane transporter activity, calcium ion transport, myosin complex, calcium:proton_antiporter_activity motor activity, cation transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01496.18 | V_ATPase_I | 1 | 502 |
| PF01496.18 | V_ATPase_I | 616 | 743 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | V-type H+-transporting ATPase subunit I [EC:3.6.3.14] | ko00190 | K02154 |
| Phagosome | V-type H+-transporting ATPase subunit I [EC:3.6.3.14] | ko04145 | K02154 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000220 | vacuolar proton-transporting V-type ATPase, V0 domain |
| GO:0015078 | hydrogen ion transmembrane transporter activity |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0033179 | proton-transporting V-type ATPase, V0 domain |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.