PH01003801G0100's details annotation
1.Annotation
ICBR annotation: sodium/calcium exchanger protein, putative, expressed
Blast result AT3G51860 : 2.00E-127
Blast annotation: cation exchanger 3
2.Location
Scaffold: PH01003801
Strand: +
| Region | Start | End |
| gene | 88770 | 93092 |
| mRNA | 88770 | 93092 |
| exon | 88770 | 89196 |
| exon | 90680 | 90747 |
| exon | 90876 | 90904 |
| exon | 91091 | 91287 |
| exon | 91362 | 91583 |
| exon | 91721 | 91969 |
| exon | 92073 | 92126 |
| exon | 92242 | 92358 |
| exon | 92551 | 92641 |
| exon | 92712 | 93092 |
| CDS | 88876 | 89196 |
| CDS | 90680 | 90747 |
| CDS | 90876 | 90904 |
| CDS | 91091 | 91287 |
| CDS | 91362 | 91583 |
| CDS | 91721 | 91969 |
| CDS | 92073 | 92126 |
| CDS | 92242 | 92358 |
| CDS | 92551 | 92641 |
| CDS | 92712 | 92797 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01699.23 | Na_Ca_ex | 108 | 268 |
| PF01699.23 | Na_Ca_ex | 300 | 442 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0006816 | calcium ion transport |
| GO:0008324 | cation transmembrane transporter activity |
| GO:0015369 | calcium:hydrogen antiporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.