Annotation of co-expression genes

PH01003807G0150's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G74790 : 0.00E+00
Blast annotation: catalytics

2.Location

Scaffold: PH01003807
Strand: +

RegionStartEnd
gene8730799487
mRNA8730799487
exon8730787880
exon8797488137
exon8863389424
exon8959889814
exon9181791819
exon9198992167
exon9275892999
exon9337393822
exon9386895411
exon9617596522
exon9690597816
exon9818099487
CDS8776987880
CDS8797488137
CDS8863389424
CDS8959889814
CDS9181791819
CDS9198992167
CDS9275892999
CDS9337393822
CDS9386895411
CDS9617596522
CDS9690597816
CDS9818099354

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000630CAMK_AMPK (from iTAK)
oxidoreductase_activity,_acting_on_the_CH-OH_group_of_donors,_quinone_or_similar_compound_as_acceptor

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07995.10GSDH226515
PF00078.26RVT_115621670
PF13966.5zf-RVT19612042

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0003824catalytic activity
GO:0003964RNA-directed DNA polymerase activity
GO:0005975carbohydrate metabolic process
GO:0006278RNA-dependent DNA replication
GO:0016901oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor
GO:0048038quinone binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.