PH01003809G0130's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative
Blast result AT2G47460 : 1.30E-62
Blast annotation: myb domain protein 12
2.Location
Scaffold: PH01003809
Strand: +
| Region | Start | End |
| gene | 70154 | 75450 |
| mRNA | 70154 | 75450 |
| exon | 70154 | 70854 |
| exon | 71049 | 71178 |
| exon | 74047 | 75450 |
| CDS | 70722 | 70854 |
| CDS | 71049 | 71178 |
| CDS | 74047 | 74809 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB |
| Transcription_Regulator(from PlantTFDB) | MYB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 14 | 61 |
| PF00249.30 | Myb_DNA-binding | 67 | 112 |
| PF06640.10 | P_C | 130 | 248 |
| PF06640.10 | P_C | 249 | 336 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.