PH01003828G0050's details annotation
1.Annotation
ICBR annotation: signal peptide peptidase-like 2B, putative, expressed
Blast result AT1G05820 : 7.50E-52
Blast annotation: SIGNAL PEPTIDE PEPTIDASE-LIKE 5
2.Location
Scaffold: PH01003828
Strand: +
| Region | Start | End |
| gene | 27047 | 36459 |
| mRNA | 27047 | 36459 |
| exon | 27047 | 27981 |
| exon | 29460 | 29618 |
| exon | 29755 | 29866 |
| exon | 29988 | 30107 |
| exon | 30900 | 31057 |
| exon | 32030 | 32317 |
| exon | 33090 | 33266 |
| exon | 34851 | 34943 |
| exon | 35798 | 35937 |
| exon | 36171 | 36459 |
| CDS | 27829 | 27981 |
| CDS | 29460 | 29618 |
| CDS | 29755 | 29866 |
| CDS | 29988 | 30107 |
| CDS | 30900 | 31057 |
| CDS | 32030 | 32317 |
| CDS | 33090 | 33266 |
| CDS | 34851 | 34943 |
| CDS | 35798 | 35937 |
| CDS | 36171 | 36282 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001193 | HRT Transcription_Regulator(from iTAK) HRT-like Transcription_Regulator(from PlantTFDB) GH10 Glycoside_Hydrolases CBM22 Carbohydrate-Binding_Modules hydrolase activity, acting on glycosyl bonds, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02225.21 | PA | 97 | 172 |
| PF04258.12 | Peptidase_A22B | 389 | 477 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.