PH01003831G0110's details annotation
1.Annotation
ICBR annotation: hhH-GPD superfamily base excision DNA repair protein, putative, expressed
Blast result AT3G07930 : 6.80E-29
Blast annotation: DNA glycosylase superfamily protein
2.Location
Scaffold: PH01003831
Strand: +
| Region | Start | End |
| gene | 87691 | 92664 |
| mRNA | 87691 | 92664 |
| exon | 87691 | 88206 |
| exon | 88852 | 89166 |
| exon | 89495 | 90298 |
| exon | 90811 | 91007 |
| exon | 91175 | 91261 |
| exon | 92070 | 92664 |
| CDS | 88054 | 88206 |
| CDS | 88852 | 89166 |
| CDS | 89495 | 90298 |
| CDS | 90811 | 91007 |
| CDS | 91175 | 91261 |
| CDS | 92070 | 92214 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | methyl-CpG-binding domain protein 4 [EC:3.2.2.-] | ko03410 | K10801 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.