PH01003853G0030's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L7, putative, expressed
Blast result AT1G80750 : 1.50E-56
Blast annotation: Ribosomal protein L30/L7 family protein
2.Location
Scaffold: PH01003853
Strand: -
| Region | Start | End |
| gene | 17020 | 19479 |
| mRNA | 17020 | 19479 |
| exon | 17020 | 17868 |
| exon | 18504 | 18606 |
| exon | 18722 | 18859 |
| exon | 18983 | 19479 |
| CDS | 17653 | 17868 |
| CDS | 18504 | 18606 |
| CDS | 18722 | 18859 |
| CDS | 18983 | 19269 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08079.11 | Ribosomal_L30_N | 12 | 74 |
| PF00327.19 | Ribosomal_L30 | 89 | 139 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L7e | ko03011 | K02937 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.