PH01003859G0110's details annotation
1.Annotation
ICBR annotation: allene oxide cyclase 4, chloroplast precursor, putative, expressed
Blast result AT3G25780 : 7.20E-69
Blast annotation: allene oxide cyclase 3
2.Location
Scaffold: PH01003859
Strand: -
| Region | Start | End |
| gene | 77352 | 79040 |
| mRNA | 77352 | 79040 |
| exon | 77352 | 78126 |
| exon | 78251 | 79040 |
| CDS | 77725 | 78126 |
| CDS | 78251 | 78577 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001245 | CAAX-box_protein_processing RLK-Pelle_SD-2b (from iTAK) ubiquitin-ubiquitin ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06351.10 | Allene_ox_cyc | 66 | 240 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| alpha-Linolenic acid metabolism | allene oxide cyclase [EC:5.3.99.6] | ko00592 | K10525 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009507 | chloroplast |
| GO:0016853 | isomerase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.