PH01003891G0100's details annotation
1.Annotation
ICBR annotation: amidase, putative, expressed
Blast result AT4G34880 : 4.10E-51
Blast annotation: Amidase family protein
2.Location
Scaffold: PH01003891
Strand: +
| Region | Start | End |
| gene | 52494 | 54739 |
| mRNA | 52494 | 54739 |
| exon | 52494 | 52978 |
| exon | 53359 | 53405 |
| exon | 53493 | 53532 |
| exon | 53638 | 54089 |
| exon | 54187 | 54426 |
| exon | 54531 | 54739 |
| CDS | 52877 | 52978 |
| CDS | 53359 | 53405 |
| CDS | 53493 | 53532 |
| CDS | 53638 | 54089 |
| CDS | 54187 | 54426 |
| CDS | 54531 | 54717 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01425.20 | Amidase | 104 | 328 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.