PH01003892G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G19050 : 2.90E-20
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01003892
Strand: -
| Region | Start | End |
| gene | 19337 | 24515 |
| mRNA | 19337 | 24515 |
| exon | 19337 | 20486 |
| exon | 20693 | 20838 |
| exon | 21056 | 21121 |
| exon | 22220 | 22281 |
| exon | 22341 | 22440 |
| exon | 22610 | 22669 |
| exon | 23008 | 23069 |
| exon | 23578 | 24515 |
| CDS | 20423 | 20486 |
| CDS | 20693 | 20838 |
| CDS | 21056 | 21121 |
| CDS | 22220 | 22281 |
| CDS | 22341 | 22440 |
| CDS | 22610 | 22669 |
| CDS | 23008 | 23069 |
| CDS | 23578 | 23650 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08538.9 | DUF1749 | 119 | 181 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.