Annotation of co-expression genes

PH01003896G0140's details annotation

1.Annotation

ICBR annotation: eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed

Blast result AT5G57870 : 2.70E-77
Blast annotation: MIF4G domain-containing protein / MA3 domain-containing protein

2.Location

Scaffold: PH01003896
Strand: -

RegionStartEnd
gene8283293579
mRNA8283293579
exon8283283288
exon8361583755
exon8415684506
exon8458484671
exon8481484911
exon8549885701
exon8586285966
exon8909689212
exon8943989803
exon9030790349
exon9275192849
exon9342793579
CDS8321783288
CDS8361583755
CDS8415684506
CDS8458484671
CDS8481484911
CDS8549885701
CDS8586285966
CDS8909689212
CDS8943989803
CDS9030790349
CDS9275192849
CDS9342793456

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13966.5zf-RVT141186
PF02854.18MIF4G349499

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003723RNA binding
GO:0005488binding
GO:0005515protein binding
GO:0016070RNA metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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