PH01003898G0120's details annotation
1.Annotation
ICBR annotation: zinc finger, ZZ type family protein, expressed
Blast result AT4G24690 : 1.60E-57
Blast annotation: ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
2.Location
Scaffold: PH01003898
Strand: -
| Region | Start | End |
| gene | 54302 | 60039 |
| mRNA | 54302 | 60039 |
| exon | 54302 | 55881 |
| exon | 56033 | 56182 |
| exon | 56241 | 56504 |
| exon | 56629 | 56713 |
| exon | 56828 | 58353 |
| exon | 59597 | 60039 |
| CDS | 54931 | 55881 |
| CDS | 56033 | 56182 |
| CDS | 56241 | 56504 |
| CDS | 56629 | 56713 |
| CDS | 56828 | 58353 |
| CDS | 59597 | 59668 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000163 | SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation nucleus, RNA-directed RNA polymerase activity, zinc ion binding, histone_binding histone-lysine N-methyltransferase activity, |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001705 | Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation chloroplast, histone-lysine N-methyltransferase activity, histone_binding ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001742 | GT31 GlycosylTransferases Basal_transcription_factors fatty-acyl-CoA binding, TBP-class_protein_binding ubiquitin-dependent protein catabolic process, protein glycosylation, galactosyltransferase activity, ubiquitin thiolesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00564.23 | PB1 | 23 | 103 |
| PF00569.16 | ZZ | 513 | 546 |
| PF16158.4 | N_BRCA1_IG | 583 | 700 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.