PH01003904G0130's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT3G63340 : 3.40E-75
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01003904
Strand: -
| Region | Start | End |
| gene | 101540 | 111107 |
| mRNA | 101540 | 111107 |
| exon | 101540 | 102446 |
| exon | 103296 | 103521 |
| exon | 104230 | 104437 |
| exon | 105064 | 105217 |
| exon | 105485 | 105558 |
| exon | 106061 | 106431 |
| exon | 107750 | 108013 |
| exon | 108632 | 108682 |
| exon | 109225 | 109366 |
| exon | 110228 | 111107 |
| CDS | 101607 | 102446 |
| CDS | 103296 | 103521 |
| CDS | 104230 | 104437 |
| CDS | 105064 | 105217 |
| CDS | 105485 | 105558 |
| CDS | 106061 | 106431 |
| CDS | 107750 | 108013 |
| CDS | 108632 | 108682 |
| CDS | 109225 | 109366 |
| CDS | 110228 | 110540 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000860 | protein targeting, drug_binding P-P-bond-hydrolysis-driven protein transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 206 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.