PH01003908G0050's details annotation
1.Annotation
ICBR annotation: transcription elongation factor protein, putative, expressed
Blast result AT5G09850 : 1.30E-48
Blast annotation: Transcription elongation factor (TFIIS) family protein
2.Location
Scaffold: PH01003908
Strand: +
| Region | Start | End |
| gene | 31144 | 36422 |
| mRNA | 31144 | 36422 |
| exon | 31144 | 33858 |
| exon | 33957 | 34025 |
| exon | 34161 | 34243 |
| exon | 34368 | 34435 |
| exon | 34552 | 34604 |
| exon | 34957 | 34996 |
| exon | 35106 | 35248 |
| exon | 35439 | 35631 |
| exon | 35905 | 36422 |
| CDS | 33484 | 33858 |
| CDS | 33957 | 34025 |
| CDS | 34161 | 34243 |
| CDS | 34368 | 34435 |
| CDS | 34552 | 34604 |
| CDS | 34957 | 34996 |
| CDS | 35106 | 35248 |
| CDS | 35439 | 35631 |
| CDS | 35905 | 36020 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | IWS1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08711.10 | Med26 | 133 | 182 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.