PH01003914G0010's details annotation
1.Annotation
ICBR annotation: calmodulin-binding protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01003914
Strand: -
| Region | Start | End |
| gene | 2317 | 13066 |
| mRNA | 2317 | 13066 |
| exon | 2317 | 2549 |
| exon | 2645 | 2735 |
| exon | 3054 | 3063 |
| exon | 4848 | 4905 |
| exon | 5605 | 5690 |
| exon | 5824 | 5954 |
| exon | 6181 | 6317 |
| exon | 6994 | 7019 |
| exon | 8074 | 8131 |
| exon | 8456 | 8559 |
| exon | 9570 | 9594 |
| exon | 10664 | 10786 |
| exon | 12082 | 12195 |
| exon | 12408 | 12487 |
| exon | 13032 | 13066 |
| CDS | 2391 | 2549 |
| CDS | 2645 | 2735 |
| CDS | 3054 | 3063 |
| CDS | 4848 | 4905 |
| CDS | 5605 | 5690 |
| CDS | 5824 | 5954 |
| CDS | 6181 | 6317 |
| CDS | 6994 | 7019 |
| CDS | 8074 | 8131 |
| CDS | 8456 | 8559 |
| CDS | 9570 | 9594 |
| CDS | 10664 | 10786 |
| CDS | 12082 | 12195 |
| CDS | 12408 | 12487 |
| CDS | 13032 | 13044 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000340 | PEK_PEK (from iTAK) Steroid_biosynthesis Homologous_recombination DNA metabolic process, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01433.19 | Peptidase_M1 | 31 | 80 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.