PH01003925G0070's details annotation
1.Annotation
ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result AT1G19860 : 6.80E-68
Blast annotation: Zinc finger C-x8-C-x5-C-x3-H type family protein
2.Location
Scaffold: PH01003925
Strand: -
| Region | Start | End |
| gene | 69811 | 75627 |
| mRNA | 69811 | 75627 |
| exon | 69811 | 71497 |
| exon | 71582 | 71706 |
| exon | 71799 | 72008 |
| exon | 74300 | 74353 |
| exon | 74514 | 75627 |
| CDS | 70549 | 71497 |
| CDS | 71582 | 71706 |
| CDS | 71799 | 72008 |
| CDS | 74300 | 74353 |
| CDS | 74514 | 74708 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000447 | CMGC_MAPK (from iTAK) C3H Transcription_Regulator(from PlantTFDB) ubiquitin ligase complex, extracellular region, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.