PH01003943G0030's details annotation
1.Annotation
ICBR annotation: peptidase, T1 family, putative, expressed
Blast result AT3G60820 : 4.50E-91
Blast annotation: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
2.Location
Scaffold: PH01003943
Strand: +
| Region | Start | End |
| gene | 4378 | 9002 |
| mRNA | 4378 | 9002 |
| exon | 4378 | 4814 |
| exon | 4906 | 5013 |
| exon | 6693 | 6774 |
| exon | 7701 | 7830 |
| exon | 7925 | 8067 |
| exon | 8249 | 8335 |
| exon | 8434 | 9002 |
| CDS | 4774 | 4814 |
| CDS | 4906 | 5013 |
| CDS | 6693 | 6774 |
| CDS | 7701 | 7830 |
| CDS | 7925 | 8067 |
| CDS | 8249 | 8335 |
| CDS | 8434 | 8508 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00227.25 | Proteasome | 11 | 206 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Proteasome | 20S proteasome subunit beta 6 [EC:3.4.25.1] | ko03051 | K02732 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004175 | endopeptidase activity |
| GO:0004298 | threonine-type endopeptidase activity |
| GO:0005839 | proteasome core complex |
| GO:0051603 | proteolysis involved in cellular protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.