Annotation of co-expression genes

PH01003944G0140's details annotation

1.Annotation

ICBR annotation: sulfate transporter, putative, expressed

Blast result AT1G78000 : 0.00E+00
Blast annotation: sulfate transporter 1;2

2.Location

Scaffold: PH01003944
Strand: -

RegionStartEnd
gene98596103120
mRNA98596103120
exon9859698923
exon100041100117
exon100209100294
exon100397100587
exon100687100973
exon101060101186
exon101274101390
exon101486101599
exon101691101756
exon101852102026
exon102098102305
exon102401102449
exon102533103120
CDS9878098923
CDS100041100117
CDS100209100294
CDS100397100587
CDS100687100973
CDS101060101186
CDS101274101390
CDS101486101599
CDS101691101756
CDS101852102026
CDS102098102305
CDS102401102449
CDS102533102856

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000016protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00916.19Sulfate_transp91471
PF01740.20STAS524642

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008271secondary active sulfate transmembrane transporter activity
GO:0008272sulfate transport
GO:0015116sulfate transmembrane transporter activity
GO:0016020membrane
GO:0016021integral to membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.