PH01003949G0150's details annotation
1.Annotation
ICBR annotation: KH domain-containing protein, putative, expressed
Blast result AT2G25970 : 4.60E-77
Blast annotation: KH domain-containing protein
2.Location
Scaffold: PH01003949
Strand: +
| Region | Start | End |
| gene | 96999 | 103811 |
| mRNA | 96999 | 103811 |
| exon | 96999 | 97440 |
| exon | 98395 | 98504 |
| exon | 98624 | 98809 |
| exon | 98898 | 98993 |
| exon | 99209 | 99280 |
| exon | 99669 | 99785 |
| exon | 100000 | 100083 |
| exon | 101522 | 103811 |
| CDS | 97110 | 97440 |
| CDS | 98395 | 98504 |
| CDS | 98624 | 98809 |
| CDS | 98898 | 98993 |
| CDS | 99209 | 99280 |
| CDS | 99669 | 99785 |
| CDS | 100000 | 100083 |
| CDS | 101522 | 102679 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00013.28 | KH_1 | 139 | 204 |
| PF00013.28 | KH_1 | 234 | 300 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.