PH01003957G0160's details annotation
1.Annotation
ICBR annotation: peroxiredoxin, putative, expressed
Blast result AT5G06290 : 2.00E-106
Blast annotation: 2-cysteine peroxiredoxin B
2.Location
Scaffold: PH01003957
Strand: +
| Region | Start | End |
| gene | 103396 | 107095 |
| mRNA | 103396 | 107095 |
| exon | 103396 | 103702 |
| exon | 103790 | 103864 |
| exon | 104020 | 104101 |
| exon | 104192 | 104271 |
| exon | 105395 | 105496 |
| exon | 105611 | 105724 |
| exon | 106405 | 107095 |
| CDS | 103514 | 103702 |
| CDS | 103790 | 103864 |
| CDS | 104020 | 104101 |
| CDS | 104192 | 104271 |
| CDS | 105395 | 105496 |
| CDS | 105611 | 105724 |
| CDS | 106405 | 106521 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00578.20 | AhpC-TSA | 69 | 202 |
| PF10417.8 | 1-cysPrx_C | 223 | 257 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016209 | antioxidant activity |
| GO:0016491 | oxidoreductase activity |
| GO:0051920 | peroxiredoxin activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.