PH01003970G0080's details annotation
1.Annotation
ICBR annotation: CGMC_MAPKCMGC_2.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Blast result AT2G42880 : 0.00E+00
Blast annotation: MAP kinase 20
2.Location
Scaffold: PH01003970
Strand: +
| Region | Start | End |
| gene | 60872 | 66360 |
| mRNA | 60872 | 66360 |
| exon | 60872 | 61510 |
| exon | 62145 | 62272 |
| exon | 62391 | 62450 |
| exon | 64185 | 64334 |
| exon | 64416 | 64571 |
| exon | 64706 | 64917 |
| exon | 65045 | 65146 |
| exon | 65440 | 65522 |
| exon | 65610 | 66360 |
| CDS | 61114 | 61510 |
| CDS | 62145 | 62272 |
| CDS | 62391 | 62450 |
| CDS | 64185 | 64334 |
| CDS | 64416 | 64571 |
| CDS | 64706 | 64917 |
| CDS | 65045 | 65146 |
| CDS | 65440 | 65522 |
| CDS | 65610 | 66040 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 13 | 304 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004707 | MAP kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.