PH01003981G0150's details annotation
1.Annotation
ICBR annotation: histone H3, putative, expressed
Blast result AT5G10980 : 3.60E-72
Blast annotation: Histone superfamily protein
2.Location
Scaffold: PH01003981
Strand: -
| Region | Start | End |
| gene | 112987 | 115690 |
| mRNA | 112987 | 115690 |
| exon | 112987 | 114954 |
| exon | 115030 | 115120 |
| exon | 115223 | 115299 |
| exon | 115493 | 115690 |
| CDS | 114784 | 114954 |
| CDS | 115030 | 115120 |
| CDS | 115223 | 115299 |
| CDS | 115493 | 115564 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001772 | Plant_hormone_signal_transduction outer membrane-bounded periplasmic space, cytoskeleton, regulation of actin filament polymerization, bZIP Transcription_Regulator(from PlantTFDB) nucleosome, |
| coexpression network | CFinderM001833 | CMGC_GSK (from iTAK) PLATZ Transcription_Regulator(from iTAK) nucleosome, nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00125.23 | Histone | 1 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000786 | nucleosome |
| GO:0003677 | DNA binding |
| GO:0006334 | nucleosome assembly |
| GO:0046982 | protein heterodimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.