PH01003995G0050's details annotation
1.Annotation
ICBR annotation: FG-GAP repeat-containing protein, putative, expressed
Blast result AT3G51050 : 8.00E-115
Blast annotation: FG-GAP repeat-containing protein
2.Location
Scaffold: PH01003995
Strand: -
| Region | Start | End |
| gene | 56272 | 61583 |
| mRNA | 56272 | 61583 |
| exon | 56272 | 58159 |
| exon | 58631 | 58930 |
| exon | 60099 | 60164 |
| exon | 60707 | 60756 |
| exon | 61130 | 61583 |
| CDS | 57683 | 58159 |
| CDS | 58631 | 58930 |
| CDS | 60099 | 60164 |
| CDS | 60707 | 60756 |
| CDS | 61130 | 61199 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001354 | STE_STE20-YSK (from iTAK) GT2 GlycosylTransferases Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis N-Glycan_biosynthesis endoplasmic reticulum membrane, membrane coat, microtubule associated complex, |
| coexpression network | CFinderM001355 | STE_STE20-YSK (from iTAK) binding, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) endoplasmic reticulum membrane, membrane coat, regulation of ARF protein signal transduction, GPI anchor biosynthetic process, microtubule associated complex, ARF guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.