Annotation of co-expression genes

PH01004001G0150's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT2G27060 : 0.00E+00
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01004001
Strand: -

RegionStartEnd
gene104282108339
mRNA104282108339
exon104282106816
exon107125108339
CDS104532106816
CDS107125108040

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000168RLK-Pelle_LRR-III (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
RLK-Pelle_LRR-I-2 (from iTAK)
ATP binding,
identical protein binding,
negative regulation of catalytic activity,
coexpression networkCFinderM001056RLK-Pelle_LRR-III (from iTAK)
RLK-Pelle_URK-1 (from iTAK)
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
protein kinase activity,
ATP binding,
coexpression networkCFinderM001446RLK-Pelle_LRR-III (from iTAK)
membrane,
ion transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13855.5LRR_896152
PF13516.5LRR_6292306
PF13516.5LRR_6313328
PF07714.16Pkinase_Tyr760987

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.