PH01004013G0130's details annotation
1.Annotation
ICBR annotation: trehalose-6-phosphate synthase, putative, expressed
Blast result AT1G78580 : 0.00E+00
Blast annotation: trehalose-6-phosphate synthase
2.Location
Scaffold: PH01004013
Strand: -
| Region | Start | End |
| gene | 101299 | 111255 |
| mRNA | 101299 | 111255 |
| exon | 101299 | 102086 |
| exon | 103138 | 103236 |
| exon | 103331 | 103461 |
| exon | 103559 | 103646 |
| exon | 103722 | 103844 |
| exon | 103937 | 104116 |
| exon | 104651 | 104768 |
| exon | 104909 | 105096 |
| exon | 105257 | 105357 |
| exon | 105521 | 105569 |
| exon | 105886 | 105974 |
| exon | 106899 | 107049 |
| exon | 108292 | 108393 |
| exon | 108624 | 108738 |
| exon | 109450 | 109838 |
| exon | 109951 | 110048 |
| exon | 110167 | 111255 |
| CDS | 101688 | 102086 |
| CDS | 103138 | 103236 |
| CDS | 103331 | 103461 |
| CDS | 103559 | 103646 |
| CDS | 103722 | 103844 |
| CDS | 103937 | 104116 |
| CDS | 104651 | 104768 |
| CDS | 104909 | 105096 |
| CDS | 105257 | 105357 |
| CDS | 105521 | 105569 |
| CDS | 105886 | 105974 |
| CDS | 106899 | 107049 |
| CDS | 108292 | 108393 |
| CDS | 108624 | 108738 |
| CDS | 109450 | 109838 |
| CDS | 109951 | 110048 |
| CDS | 110167 | 110461 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT20 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00982.20 | Glyco_transf_20 | 64 | 529 |
| PF02358.15 | Trehalose_PPase | 588 | 793 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15;EC:3.1.3.12] | ko00500 | K16055 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003825 | alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity |
| GO:0005992 | trehalose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.