PH01004024G0030's details annotation
1.Annotation
ICBR annotation: patellin protein, putative, expressed
Blast result AT1G72160 : 3.20E-35
Blast annotation: Sec14p-like phosphatidylinositol transfer family protein
2.Location
Scaffold: PH01004024
Strand: +
| Region | Start | End |
| gene | 11314 | 13669 |
| mRNA | 11314 | 13669 |
| exon | 11314 | 12392 |
| exon | 12639 | 12765 |
| exon | 13381 | 13669 |
| CDS | 11640 | 12392 |
| CDS | 12639 | 12765 |
| CDS | 13381 | 13595 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000206 | mitochondrial inner membrane presequence translocase complex, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, Others Transcription_Regulator(from iTAK) two-component response regulator activity, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM000520 | ER_membrane_protein_complex GT96 GlycosylTransferases TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM000933 | TKL-Pl-4 (from iTAK) Others Transcription_Regulator(from iTAK) response to heat, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001290 | Protein_processing_in_endoplasmic_reticulum AGC_NDR (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00072.23 | Response_reg | 270 | 344 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000156 | phosphorelay response regulator activity |
| GO:0000160 | phosphorelay signal transduction system |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.