PH01004029G0130's details annotation
1.Annotation
ICBR annotation: DNA polymerase V, putative, expressed
Blast result AT5G64420 : 9.00E-89
Blast annotation: DNA polymerase V family
2.Location
Scaffold: PH01004029
Strand: -
| Region | Start | End |
| gene | 88545 | 97674 |
| mRNA | 88545 | 97674 |
| exon | 88545 | 90073 |
| exon | 91780 | 92278 |
| exon | 92649 | 92885 |
| exon | 94422 | 95132 |
| exon | 95455 | 95631 |
| exon | 95808 | 96035 |
| exon | 96451 | 96648 |
| exon | 96744 | 96869 |
| exon | 96966 | 97674 |
| CDS | 89301 | 90073 |
| CDS | 91780 | 92278 |
| CDS | 92649 | 92885 |
| CDS | 94422 | 95132 |
| CDS | 95455 | 95631 |
| CDS | 95808 | 96035 |
| CDS | 96451 | 96648 |
| CDS | 96744 | 96869 |
| CDS | 96966 | 97520 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001167 | RNA_transport Alanine,_aspartate_and_glutamate_metabolism eukaryotic translation initiation factor 3 complex, IMP biosynthetic process, purine ribonucleotide biosynthetic process, multicellular organismal development, translation_initiation_factor_binding N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, bHLH Transcription_Regulator(from PlantTFDB) translational initiation, Purine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04931.12 | DNA_pol_phi | 171 | 429 |
| PF04931.12 | DNA_pol_phi | 423 | 906 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003887 | DNA-directed DNA polymerase activity |
| GO:0005488 | binding |
| GO:0006351 | transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.