PH01004031G0030's details annotation
1.Annotation
ICBR annotation: regulator of chromosome condensation, putative, expressed
Blast result AT5G11580 : 5.40E-76
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01004031
Strand: -
| Region | Start | End |
| gene | 5562 | 10011 |
| mRNA | 5562 | 10011 |
| exon | 5562 | 5841 |
| exon | 6240 | 6747 |
| exon | 6858 | 7174 |
| exon | 7365 | 7887 |
| exon | 7947 | 8024 |
| exon | 8164 | 8235 |
| exon | 8286 | 8357 |
| exon | 8853 | 8980 |
| exon | 9082 | 10011 |
| CDS | 5795 | 5841 |
| CDS | 6240 | 6747 |
| CDS | 6858 | 7174 |
| CDS | 7365 | 7887 |
| CDS | 7947 | 8024 |
| CDS | 8164 | 8235 |
| CDS | 8286 | 8357 |
| CDS | 8853 | 8980 |
| CDS | 9082 | 9139 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13540.5 | RCC1_2 | 5 | 29 |
| PF00415.17 | RCC1 | 218 | 266 |
| PF00415.17 | RCC1 | 279 | 309 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.