PH01004038G0020's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT4G01730 : 2.20E-74
Blast annotation: DHHC-type zinc finger family protein
2.Location
Scaffold: PH01004038
Strand: +
| Region | Start | End |
| gene | 8920 | 17507 |
| mRNA | 8920 | 17507 |
| exon | 8920 | 14490 |
| exon | 14745 | 14813 |
| exon | 15111 | 15239 |
| exon | 15332 | 15412 |
| exon | 15510 | 15674 |
| exon | 15849 | 17507 |
| CDS | 14332 | 14490 |
| CDS | 14745 | 14813 |
| CDS | 15111 | 15239 |
| CDS | 15332 | 15412 |
| CDS | 15510 | 15674 |
| CDS | 15849 | 16331 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001706 | GH35 Glycoside_Hydrolases ion transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01529.19 | DHHC | 45 | 78 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.