PH01004041G0070's details annotation
1.Annotation
ICBR annotation: N-rich protein, putative, expressed
Blast result AT3G27090 : 5.00E-72
Blast annotation: DCD (Development and Cell Death) domain protein
2.Location
Scaffold: PH01004041
Strand: +
| Region | Start | End |
| gene | 74939 | 78647 |
| mRNA | 74939 | 78647 |
| exon | 74939 | 77392 |
| exon | 77601 | 77701 |
| exon | 77797 | 77880 |
| exon | 78290 | 78400 |
| exon | 78496 | 78647 |
| CDS | 76714 | 77392 |
| CDS | 77601 | 77701 |
| CDS | 77797 | 77880 |
| CDS | 78290 | 78400 |
| CDS | 78496 | 78540 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000606 | histone_H2A_acetylation CTP biosynthetic process, histone_H4_acetylation protein neddylation, nucleoside_diphosphate_phosphorylation UTP biosynthetic process, GTP biosynthetic process, carbohydrate phosphorylation, chromatin remodeling, |
| coexpression network | CFinderM000903 | protein neddylation, RLK-Pelle_WAK_LRK10L-1 (from iTAK) Ubiquitin_mediated_proteolysis cellular protein modification process, NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001765 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10539.8 | Dev_Cell_Death | 206 | 333 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.