Annotation of co-expression genes

PH01004048G0040's details annotation

1.Annotation

ICBR annotation: recA protein, putative, expressed

Blast result AT2G19490 : 1.00E-110
Blast annotation: recA DNA recombination family protein

2.Location

Scaffold: PH01004048
Strand: +

RegionStartEnd
gene2286633646
mRNA2286633646
exon2286626049
exon2650826555
exon2677826835
exon2707927296
exon2864828893
exon2941329500
exon3026430436
exon3064930795
exon3215532289
exon3268033646
CDS2594826049
CDS2650826555
CDS2677826835
CDS2707927296
CDS2864828893
CDS2941329500
CDS3026430436
CDS3064930795
CDS3215532289
CDS3268033072

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00154.20RecA92142
PF00154.20RecA206437

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0003697single-stranded DNA binding
GO:0005524ATP binding
GO:0006259DNA metabolic process
GO:0006281DNA repair
GO:0008094DNA-dependent ATPase activity
GO:0009432SOS response
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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