PH01004060G0120's details annotation
1.Annotation
ICBR annotation: agenet domain containing protein, putative, expressed
Blast result AT4G17330 : 5.00E-165
Blast annotation: G2484-1 protein
2.Location
Scaffold: PH01004060
Strand: -
| Region | Start | End |
| gene | 85346 | 98514 |
| mRNA | 85346 | 98514 |
| exon | 85346 | 85457 |
| exon | 85547 | 85637 |
| exon | 86037 | 86897 |
| exon | 87007 | 87125 |
| exon | 87541 | 87608 |
| exon | 89542 | 89722 |
| exon | 89867 | 89969 |
| exon | 90417 | 90523 |
| exon | 90629 | 92203 |
| exon | 92437 | 92489 |
| exon | 92576 | 92958 |
| exon | 93068 | 93495 |
| exon | 94244 | 94462 |
| exon | 94546 | 98514 |
| CDS | 85441 | 85457 |
| CDS | 85547 | 85637 |
| CDS | 86037 | 86897 |
| CDS | 87007 | 87125 |
| CDS | 87541 | 87608 |
| CDS | 89542 | 89722 |
| CDS | 89867 | 89969 |
| CDS | 90417 | 90523 |
| CDS | 90629 | 92203 |
| CDS | 92437 | 92489 |
| CDS | 92576 | 92958 |
| CDS | 93068 | 93495 |
| CDS | 94244 | 94462 |
| CDS | 94546 | 96706 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000234 | single-stranded DNA binding, LUG Transcription_Regulator(from iTAK) G-protein coupled receptor activity, nucleotide-excision repair, G-protein coupled receptor signaling pathway, Nucleotide_excision_repair nuclease activity, endonuclease activity, DNA repair, |
| coexpression network | CFinderM000970 | Protein_processing_in_endoplasmic_reticulum C3H Transcription_Regulator(from PlantTFDB) RNA_transport |
| coexpression network | CFinderM000971 | C3H Transcription_Regulator(from PlantTFDB) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity RNA_transport |
| coexpression network | CFinderM001322 | ubiquitin ligase complex, protein ubiquitination, DNA_replication protein binding, |
| coexpression network | CFinderM001445 | Nucleotide_excision_repair nucleotide-excision repair, endonuclease activity, nuclease activity, single-stranded DNA binding, protein binding, DNA repair, protein ubiquitination, |
| coexpression network | CFinderM001602 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) histone modification, C3H Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway transcription initiation, DNA-dependent, |
| coexpression network | CFinderM001741 | protein folding, Nucleotide_excision_repair mRNA_surveillance_pathway Ubiquitin_mediated_proteolysis peptidyl-prolyl cis-trans isomerase activity, nucleic acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05641.11 | Agenet | 1638 | 1702 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.