Annotation of co-expression genes

PH01004060G0130's details annotation

1.Annotation

ICBR annotation: ternary complex factor MIP1, putative, expressed

Blast result AT5G47380 : 4.00E-112
Blast annotation: Protein of unknown function, DUF547

2.Location

Scaffold: PH01004060
Strand: -

RegionStartEnd
gene100290106136
mRNA100290106136
exon100290100823
exon100884101024
exon101971102030
exon102110102209
exon102308102621
exon103040103405
exon104006104122
exon104247104357
exon104471104552
exon104695106136
CDS100422100823
CDS100884101024
CDS101971102030
CDS102110102209
CDS102308102621
CDS103040103405
CDS104006104122
CDS104247104357
CDS104471104552
CDS104695104843

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000310Glycine,_serine_and_threonine_metabolism
flavin adenine dinucleotide binding,
oxidoreductase activity, acting on CH-OH group of donors,
Biotin_metabolism
oxidation-reduction process,
alcohol metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14389.5Lzipper-MIP1105185
PF04784.13DUF547394482

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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