Annotation of co-expression genes

PH01004069G0060's details annotation

1.Annotation

ICBR annotation: RING finger protein, putative, expressed

Blast result AT3G58720 : 1.60E-20
Blast annotation: RING/U-box superfamily protein

2.Location

Scaffold: PH01004069
Strand: -

RegionStartEnd
gene4243545866
mRNA4243545866
exon4243543083
exon4326843326
exon4349245866
CDS4256143083
CDS4326843326
CDS4349243617

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000210transferase activity, transferring acyl groups other than amino-acyl groups,
RLK-Pelle_LRR-XI-1 (from iTAK)
RLK-Pelle_L-LEC (from iTAK)
RLK-Pelle_LRR-XII-1 (from iTAK)
coexpression networkCFinderM000620transferase activity, transferring acyl groups other than amino-acyl groups,
RLK-Pelle_LRR-XI-1 (from iTAK)
NAC Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000963RLK-Pelle_LRR-XI-1 (from iTAK)
Others Transcription_Regulator(from iTAK)
zinc ion binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13639.5zf-RING_2150192

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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